Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs76915750 chr1:152900457 C/T 0.000131 502 31.45 34.42 37.7 KM Plot
THCA rs76932077 chr16:79269555 G/A 0 481 31.47 32.43 5.8 KM Plot
THCA rs77011005 chr16:79272380 A/C 5.77E-12 501 31.5 31 19.35 KM Plot
THCA rs77036409 chr16:79272142 G/A 5.77E-12 501 31.5 31 19.35 KM Plot
THCA rs77046774 chr18:13825162 A/G 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs7706887 chr5:178239484 T/G 7.07E-5 498 31.27 33.32 31 KM Plot
THCA rs7714390 chr5:157184780 A/G 0.000152 499 31.93 28.12 31.13 KM Plot
THCA rs77151397 chr18:13821012 T/C 1.27E-5 501 31.42 33.4 50 KM Plot
THCA rs7720287 chr5:178209587 C/T 3.29E-5 503 31.47 34.83 24.9 KM Plot
THCA rs7722026 chr5:178227525 G/A 3.05E-5 500 31.47 33.97 24.9 KM Plot
THCA rs77224306 chr14:23571371 G/A 0 494 31.7 31.7 9.38 KM Plot
THCA rs7725396 chr5:178245717 C/T 2.98E-5 502 31.45 34.4 24.9 KM Plot
THCA rs77262055 chr16:79270002 G/C 0 480 31.62 32.35 14.98 KM Plot
THCA rs77309292 chr13:108848802 C/T 1.38E-5 496 31.47 32.9 31.73 KM Plot
THCA rs77318450 chr10:104733098 A/G 9.3E-14 500 31.4 35.6 32.1 KM Plot